Department of Computer Science
DeReEco: Deep Learning and Remote Sensing for Unlocking Global Ecosystem Resource Dynamics
DeReEco will combine remote sensing and artificial intelligence technologies to monitor, predict, and simulate changes in ecosystem properties – such as human settlement structures, agricultural use, tree and forest cover, water bodies, and carbon stocks – at a global scale.
Based on newest remote sensing imagery, novel machine learning models will be developed to understand the complex relationships between temporal dynamics in geospatial datasets. The knowledge gained on status, dynamics, and drivers of ecosystem changes will be pivotal in land degradation assessment (e.g., deforestation), in mitigating poverty (e.g., food security, agroforestry, wood products), and in managing climate change (e.g., carbon sequestration).
Climate change and population growth are currently reshaping global ecosystems at an accelerating rate causing significant changes in global environmental resources. Land degradation, which causes losses in productivity, carbon storage, and biodiversity, is said to aggravate sustainable livelihoods worldwide, and adverse impacts from extreme climate events are expected to become more frequent. Deforestation plays an important role in the global carbon budget and for changes in the global atmospheric CO2 concentration.
Remote sensing
Our knowledge of the current state of ecosystem resources and associated services supporting human society (e.g., food, fresh water, and wood) is still deficient, and also the drivers of ecosystem changes are not well understood, thereby impeding efficient adaptation and mitigation strategies to be implemented. Remote sensing remains the only viable tool to map and monitor our ecosystem resources at a global scale and an ever-increasing stream of satellite data holds great potential for unravelling these major unknowns for improved sustainable resource management.
Yet, our ability to effectively make use of this wealth of different satellite technologies for an improved understanding of global change is currently hampered by insufficient methods for handling and analysing the large amounts of spatio-temporal environmental data available.
Deep learning
Deep learning has been the main driver of the tremendous progress in artificial intelligence (AI) over the last decade and it holds great promise for remote sensing and Earth system sciences as well as for tackling climate change. However, methodological challenges have to be met to exploit the full potential of deep learning in remote sensing of the environment. Novel deep learning approaches have to be developed, which (i) monitor changes robustly and under changing input distributions, (ii) accurately detect and count individual objects, (iii) process multi-channel spatio-temporal information, and (iv) can be coupled with physical models – and all this efficiently such that petabytes of data can be processed in the context of global-scale ecosystem analyses.
DeReEco
The inter-disciplinary design of DeReEco addresses these challenges to redefine our current understanding of global ecosystem functioning and dynamics. DeReEco will advance both remote sensing as well as AI by devising conceptually new systems that can be used to better monitor ecosystem related changes and to predict and simulate the influence of climate change and human intervention on our ecosystem at a global scale.
The DeReEco team has already made promising initial steps in this direction by developing a deep learning system that accurately quantifies individual trees in regions of Africa with immediate implications for our understanding of the role of woody resources in coupled human-environmental systems.
The techniques and systems produced by DeReEco will pave the road for new research fields targeting an improved understanding of the climate-human-environment nexus. By coupling data on vegetation ecosystem services, human management and climate change with geospatial longitudinal data on human consumption/needs (food and fodder supply), a better understanding of resource distribution in time and space can be achieved. Such information will ultimately be used to quantify linkages between ecosystem conditions and health state for an improved understanding of food security.
- Oehmcke, S., Li, L., Revenga, J., Nord-Larsen, T., Trepekli, K., Gieseke, F., and Igel, C. (2024). Deep point cloud regression for above-ground forest biomass estimation from airborne LiDAR. Remote Sensing of Environment 302.
- Abel, C., Abdi, A.M., Tagesson, T., Horion, S., and Fensholt, R. (2023). Contrasting ecosystem vegetation response in global drylands under drying and wetting conditions. Global Change Biology.
- Erik C. Duncan, Sergii Skakun, Ankit Kariryaa, and Alexander V. Prishchepov (2023). Detection and mapping of artillery craters with very high spatial resolution satellite imagery and deep learning. Science of Remote Sensing 7.
- Hiernaux, P., Issoufou, H. B.-A., Igel, C., Kariryaa, A., Kourouma, M., Chave, J., Mougin, E., and Savadogo, P. (2023). Allometric equations to estimate the dry mass of Sahel woody plants from very-high resolution satellite imagery. Forest Ecology and Management
529. - Igel, C., and Oehmcke, S. (2023). Remember to correct the bias when using deep learning for regression! Künstliche Intelligenz.
- Lang, N., Jetz, W., Schindler, K., and Wegner, J, D.(2023). A high-resolution canopy height model of the Earth. Nature Ecology & Evolution 7:1778–1789.
- Li, S., Brandt, M., Fensholt, F., Kariryaa, A., Igel, C., Gieseke, F., Nord-Larsen, T., Oehmcke, S., Holm Carlsen, A., Junttila, S., Tong, X., d’Aspremont, A., and Ciais, P. (2023). Deep learning enables image-based tree counting, crown segmentation and height prediction at national scale. PNAS Nexus 2(4).
- Liu, S., Brandt, M., Nord-Larsen, T., Chave, J., Reiner, F., Lang, N., Tong, X., Ciais, P., Igel, I., Pascual, A., Guerra-Hernandez, J., Li, S., Mugabowindekwe, M., Saatchi, S., Yue, Y., Chen, Z., and Fensholt, R. (2023). The overlooked contribution of trees outside forests to tree cover and woody biomass across Europe. Science Advances 9(37).
- Reiner, F., Brandt, B.,Tong, X., Skole, D., Kariryaa, A., Ciais, P., Davies, A., Hiernaux, P., Chave, J., Mugabowindekwe, M., Igel, C., Oehmcke, S., Gieseke, F., Li, S., Liu, S., Saatchi, S. S., Boucher, P., Singh, J., Taugourdeau, S., Dendoncker, M., Song, X.-P., Mertz, O., Tucker, C., and Fensholt, R. (2023). More than one quarter of Africa’s tree cover found outside areas previously classified as forest. Nature Communications 14.
- Tong, X., Brandt, M., Yue, Y., Zhang, X., Fensholt, R., Ciais, P., Wang, K., Liu, S., Zhang, W., Mao, C. and Jepsen, M.R. (2023). Reforestation policies around 2000 in southern China led to forest densification and expansion in the 2010s. Communications Earth & Environment,4(1).
- Tucker, C., Brandt, M., Hiernaux, P., Kariryaa, A., Rasmussen, K., Small, J., Igel, C., Reiner, F., Melocik, K., Meyer, J., Sinno, S., Romero, E., Glen- nie, E., Fitts, Y., Morin, A., Pinzon, J., McClain, D., Morin, P., Porter, C., Loeffle, S., Kergoat, L., Issoufou, B.-A., Savadogo, P., Wigneron, J.-P., Poulter, B., Ciais, P., Kaufmann, R., Myneni, R., Saatchi, S., and Fensholt, R. (2023). Sub-continental scale carbon stocks of individual trees in African drylands. Nature 615:80-86.
- Xi, Y., Zhang, W., Brandt, M., Tian, Q. and Fensholt, R. (2023). Mapping tree species diversity of temperate forests using multi-temporal Sentinel-1 and-2 imagery. Science of Remote Sensing 8, p.100094.
- Zang, H., Kariryaa, A., Guthula, V. B., Igel, C., & Oehmcke, S. (2023). Predicting urban tree cover from incomplete point labels and limited background information. Urban-AI@SIGSPATIAL 2023 (pp. 52-60)
- Zhang, W., Koch, J., Wei, F., Zeng, Z., Fang, Z., and Fensholt, R. (2023). Soil moisture and atmospheric aridity impact spatio‐temporal changes in evapotranspiration at a global scale. Journal of Geophysical Research: Atmospheres, e2022JD038046.
- Zhang, W., Fensholt, R. and Brandt, M. (2023). Projected Rainfall‐Driven Expansion of Woody Cover in African Drylands. Geophysical Research Letters, 50(15), p.e2023GL103932.
- Fang, Z., Zhang, W., Brandt, M., Abdi, A.M. and Fensholt, R. (2022). Globally increasing atmospheric aridity over the 21st century. Earth's Future, e2022EF003019.
- Kovács, G.M., Horion, S. and Fensholt, R. (2022). Characterizing ecosystem change in wetlands using dense earth observation time series. Remote Sensing of Environment 281:113267.
- Lu, T., Brandt, M., Tong, X., Hiernaux, P., Leroux, L., Ndao, B., and Fensholt, R. (2022). Mapping the abundance of multipurpose agroforestry Faidherbia albida trees in Senegal. Remote Sensing, 14(3), 662
Mugabowindekwe, M., Brandt, M., Chave, J., Reiner, F., Skole, D., Kariryaa, A., Igel, C., Hiernaux, P., Ciais, P., Mertz, O., Tong, X., Li, S., Rwanyiziri, G., Dushimiyimana, T., Ndoli, A., Uwizeyimana, V. Lillesø, J.-P., Gieseke, F., Tucker, C., Saatchi, S. S., and Fensholt, R. (2022). Nation-wide mapping of tree-level aboveground carbon stocks in Rwanda. Nature Climate Change 13:91-97 - Oehmcke, S., Li, L., Revenga, J., Nord-Larsen, T., Trepekli, K., Gieseke, F., and Igel, C. (2022) Deep Learning Based 3D Point Cloud Regression for Estimating Forest Biomass. In: International Conference on Advances in Geographic Information Systems (ACM SIGSPATIAL), ACM, 2022.
- Pi, X., Luo, Q., Feng, L., Xu, Y., Tang, J., Liang, X., Ma, E., Cheng, R., Fensholt, R., Brandt, M., Cai, X., Gibson, L., Liu, J., Zheng, C., Li, W. and Bryan, B.A. (2022). Mapping global lake dynamics reveals the emerging roles of small lakes. Nature Communications, 13(1), pp.1-12
- Revenga, J. C., Trepekli, K., Oehmcke, S., Jensen, R., Li, L., Igel, C., Gieseke, F., and Friborg, T. (2022). Aboveground biomass prediction in croplands at sub-meter resolution based on UAV-LiDAR and machine learning methods. Remote Sensing 14(16):3912.
- Hellweg, T., Oehmcke, S., Kariryaa, A., Gieseke, F., and Igel, C. (2022). Ensemble Learning for Semantic Segmentation of Ancient Maya Architectures. In D. Kocev, N. Simidjievski, A. Kostovska, I. Dimitrovski, and Žiga Kokalj, editors, Discover the Mysteries of the Maya, pp. 13–19. Jožef Stefan Institute, Jamova cesta 39, 1000 Ljubljana, Slovenia.
- Li, Q., Yue, Y., Liu, S., Brandt, M., Chen, Z., Tong, X., Wang, K., Chang, J. and Fensholt, R. (2022). Beyond tree cover: Characterizing southern China's forests using deep learning. Remote Sensing in Ecology and Conservation.
- Lorenzen, S.S, Igel, C., and Nielsen, M. (2022). Information Bottleneck: Exact Analysis of (Quantized) Neural Networks. International Conference on Learning Representations (ICLR).
- Oehmcke, S., and Gieseke, F. (2022). Input Selection for Bandwidth-Limited Neural Network Inference. SIAM International Conference on Data Mining (SDM).
- Pi, X., Luo, Q., Feng, L., Xu, Y., Tang, J., Liang, X., Ma, E., Cheng, R., Fensholt, R., Brandt, M., Cai, X., Gibson, L., Liu, J., Zheng, C., Li, W. and Bryan, B.A. (2022). Mapping global lake dynamics reveals the emerging roles of small lakes. Nature Communications, 13(1):1-12.
- Barvels, E. and Fensholt, R. (2021). Earth Observation-based Detectability of the Effects of Land Management Programmes to Counter Land Degradation: A Case Study from the Highlands of the Ethiopian Plateau. Remote Sensing, 13(7), 1297.
- Brügge, K., Fischer, A., and Igel, C. (2021). On the convergence of the Metropolis algorithm with fixed-order updates for multivariate binary probability distributions. International Conference on Artificial Intelligence and Statistics (AISTATS), Proceedings of Machine Learning Research 130:469-477.
- Oehmcke, S., Nyegaard-Signori, T., Grogan, K., and Gieseke, F. (2021). Estimating Forest Canopy Height With Multi-Spectral and Multi-Temporal Imagery Using Deep Learning. IEEE BigData 2021: 4915-4924.
- Wu Y.S., Masegosa, A.R., Lorenzen, S.S., Igel, C., and Seldin, Y. Chebyshev-Cantelli PAC-Bayes-Bennett Inequality for the Weighted Majority Vote. Advances in Neural Information Processing Systems (NeurIPS), 2021
- Zhang, W., Brandt, M., Prishchepov, A. V., Li, Z., Lyu, C. and Fensholt, R.(2021). Mapping the dynamics of winter wheat in the North China Plain from dense Landsat time series (1999 to 2019). Remote Sensing, 13(6), 1170.
- Brandt, M., Tucker, C. J., Kariryaa, A., Rasmussen, K., Abel, C., Small, J. Chave, C., Vang Rasmussen, L., Hiernaux, P., Diouf, A. A., Kergoat, L., Mertz, O., Igel, C., Gieseke, F., Schöning, J., Li, S., Melocik, K., Meyer, J., Sinno, S., Romero, E., Glennie, E., Montagu, A., Dendoncker, M., and Fensholt, R. (2020). An unexpectedly large count of trees in the western Sahara and Sahel. Nature 587: 78–82.
- Czolbe, S., Krause, O., Cox, I., and Igel, C. (2020) A Loss Function for Generative Neural Networks Based on Watson's Perceptual Model. Advances in Neural Information Processing Systems (NeurIPS).
- Masegosa, A. R., Lorenzen, S. S., Igel, C., and Seldin, Y. (2020) Second Order PAC-Bayesian Bounds for the Weighted Majority Vote. Advances in Neural Information Processing Systems (NeurIPS).
- Oehmcke, S., Chen, T.H., Prishchepov, A. V., and Gieseke, F. (2020). Creating cloud-free satellite imagery from image time series with deep learning. BigSpatial@SIGSPATIAL 2020: 3:1-3:10.
DeReEco is supported by NASA and the Danish Meteorological Institute.
The project is funded by The Villum Foundation.
Researchers
Name | Title | Phone | |
---|---|---|---|
Ankit Kariryaa | Assistant Professor - Tenure Track | +4535328046 | |
Christian Igel | Professor | +4535335674 | |
Christin Abel | Postdoc | +4535332467 | |
Fabian Christian Gieseke | Associate Professor | ||
Gyula Mate Kovács | Postdoc | +4591922293 | |
Hui Zhang | PhD Fellow | +4535327586 | |
Nico Lang | Postdoc | +4535323911 | |
Rasmus Fensholt | Professor | +4535322526 | |
Stefan Oehmcke | Assistant Professor | ||
Stéphanie Marie Anne F Horion | Associate Professor | +4535325878 | |
Venkanna Babu Guthula | PhD Fellow | +4535328915 | |
Xiaoye Tong | Postdoc | +4535331239 |
Contact
Rasmus Fensholdt, Department of Geosciences and Natural Resource Management
Christian Igel, Department of Computer Science
Project: Deep Learning and Remote Sensing for Unlocking Global Ecosystem Resource Dynamics (DeReEco)
Period: 2020-2025
Funding: DKK 14.9 million